iRF_LOOPy
High-performance Python package for inferring Gene Regulatory Networks (GRNs) using Iterative Random Forest (iRF).
Portfolio
metnet-direct-auxiliary
Codebase for analyzing the link between fungal metabolomic outputs and exogenous treatment triggers.
RWRtoolkit
Command-line and R toolkit for performing Random Walk with Restart (RWR) analyses on multiplex biological networks.
Using Bipartite Networks to Determine Interactions Between Analytes and Chemical Treatments
Patent on a bipartite network-based system for ranking metabolite–treatment relationships from LC/MS data using network centrality.